PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi0149s00170.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family TCP
Protein Properties Length: 289aa    MW: 32087 Da    PI: 10.5443
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi0149s00170.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP100.23.8e-31134220270
                TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt..................ssssa 70 
                        +g+kdrhsk++T++g+RdRRvRlsa++a++f+d+qd+LG+d++sk+++WL+++ak+       t                  ++ sa
  Vradi0149s00170.1 134 TGRKDRHSKVYTSKGPRDRRVRLSAHTAIEFYDVQDRLGYDRPSKAVDWLIKKAKTVTWNNEATtgghvsrmgfflnsqpfiGQGSA 220
                        79*****************************************************97766555545666666655544444422222 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036343.6E-28134191IPR005333Transcription factor, TCP
PROSITE profilePS5136927.087136194IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 289 aa     Download sequence    Send to blast
MHAACLTMGL NEHSGRIVTI QSLWAAAADE GLQATIVKGN SKQSKYHPPS PIQSPHDSQQ  60
QNLISTHRAH YQVSQNQPPY VEGIGRSSHG IEPSTLDQAI KHRKHNREGT FTRVMRSSVG  120
DIVQVEGGHI VRSTGRKDRH SKVYTSKGPR DRRVRLSAHT AIEFYDVQDR LGYDRPSKAV  180
DWLIKKAKTV TWNNEATTGG HVSRMGFFLN SQPFIGQGSA SAYAQSETLQ SSFSFPMTSS  240
EHQRPQPVHQ PSLFGTRFAV SDGLAGFCIP DRIQGVFSTR FWNRVKII*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150390.0AP015039.1 Vigna angularis var. angularis DNA, chromosome 6, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014524399.15e-55PREDICTED: transcription factor TCP4-like
TrEMBLA0A0L9V5145e-52A0A0L9V514_PHAAN; Uncharacterized protein
TrEMBLA0A0S3SAY25e-52A0A0S3SAY2_PHAAN; Uncharacterized protein
STRINGGLYMA06G43721.15e-43(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF148631014
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G31070.11e-40TCP domain protein 10